M. T. Degiacomi, V. Erastova, M. R. Wilson, Easy setup of molecular dynamics simulations of polymeric mixtures with Assemble!, Computer Physics Communications, Volume 202, 2016
DynDen – a tool to access convergence of MD simulations of surface phenomena
Available on GitHub (currently private repo)
Graphene Oxide Builder – a useful visual tool to build graphene oxide, with edges/holes, -C=O, -COOH, -O- and -OH on demand.
First developed by Wu Tongfei
The updated version, with small fixes and functionality, can be downloaded from GitHub